維基百科

黃桿菌科

黄杆菌目的一科细菌

黃桿菌科（學名：Flavobacteriaceae）為黃桿菌目的一科細菌。此科的模式屬為黃桿菌屬(Flavobacterium)。黃桿菌科為環境細菌。[1][2] 大多數菌種是需氧的，而有些是微需氧甚至是厭氧的；例如二氧化碳嗜纖維菌屬（Capnocytophaga）和考諾尼亞菌屬（Coenonia）。[3]

黃桿菌科
科學分類 編輯
域： 細菌域 Bacteria
門： 擬桿菌門 Bacteroidota
綱： 擬桿菌綱 Bacteroidia
目： 黃桿菌目 Flavobacteriales
科： 黃桿菌科 Flavobacteriaceae
Reichenbach 1992
模式屬
黃桿菌屬
Flavobacterium
Bergey et al. 1923
異名

Sphingomonadaceae Kosako et al. 2000

下級分類

編輯

本科包括以下屬：[4]

  • Abyssalbus Xu et al. 2022
    • Abyssalbus ytuae Xu et al. 2022[5]
  • Actibacter Kim et al. 2008
  • Aegicerativicinus Huang et al. 2022
    • Aegicerativicinus sediminis Huang et al. 2022[6]
  • Aequorivita Bowman and Nichols 2002
    • Aequorivita aestuarii (Kim et al., 2010) Hahnke et al., 2017
    • Aequorivita antarctica Bowman & Nichols, 2002
    • Aequorivita aquimaris (Thevarajoo et al. 2016) García-López et al. 2020
    • Aequorivita capsosiphonis Park et al., 2009
    • Aequorivita crocea Bowman & Nichols, 2002
    • Aequorivita echinoideorum (Lin et al., 2015) Hahnke et al., 2017
    • Aequorivita lipolytica Bowman & Nichols, 2002
    • Aequorivita marisscotiae Liu et al. 2023[7]
    • Aequorivita nionensis (Rajasabapathy et al., 2015) Hahnke et al., 2017
    • Aequorivita sinensis Wang et al. 2020[8]
    • Aequorivita soesokkakensis (Park et al., 2014) Hahnke et al., 2017
    • Aequorivita sublithincola Bowman & Nichols, 2002
    • Aequorivita viscosa Liu et al., 2013
    • Aequorivita vitellina Wang et al. 2023[9]
    • Aequorivita vladivostokensis (Nedashkovskaya et al., 2003) Hahnke et al., 2017
    • Aequorivita xiaoshiensis Wang et al. 2023[9]
  • 潮汐桿菌屬 Aestuariibaculum Jeong et al. 2013
  • Aestuariicola Yoon et al. 2008，為Lutimonas Yang et al. 2007的異名
  • Aestuariimonas Park et al. 2018
    • Aestuariimonas insulae Park et al. 2018
  • Aestuariivivens Park et al. 2015
    • Aestuariivivens insulae Park et al. 2015
    • Aestuariivivens marinum Huang et al. 2023[10]
    • Aestuariivivens sediminicola Huang et al. 2023[10]
    • Aestuariivivens sediminis Huang et al. 2023[10]
  • 海藻桿菌屬 Algibacter Nedashkovskaya et al. 2004
  • Algitalea Yoon et al. 2015
    • Algitalea ulvae Yoon et al. 2015
  • Allomuricauda Deshmukh and Oren 2023[11]
    • Allomuricauda abyssi (Wang et al. 2022) Deshmukh and Oren 2023
    • Allomuricauda aequoris (Guo et al. 2020) Deshmukh and Oren 2023
    • Allomuricauda algicola (Kim et al. 2020) Deshmukh and Oren 2023
    • Allomuricauda alvinocaridis (Liu et al. 2020) Deshmukh and Oren 2023
    • Allomuricauda amoyensis (Li et al. 2019) Deshmukh and Oren 2023
    • Allomuricauda amphidinii (Chen et al. 2021) Deshmukh and Oren 2023
    • Allomuricauda antarctica (Wu et al. 2013) Deshmukh and Oren 2023
    • Allomuricauda aquimarina (Yoon et al. 2005) Deshmukh and Oren 2023
    • Allomuricauda aurantiaca (Liang et al. 2021) Deshmukh and Oren 2023
    • Allomuricauda aurea (Zhao et al. 2022) Deshmukh and Oren 2023
    • Allomuricauda beolgyonensis (Lee et al. 2012) Deshmukh and Oren 2023
    • Allomuricauda chongwuensis (Chen et al. 2022) Deshmukh and Oren 2023
    • Allomuricauda eckloniae (Bae et al. 2007) Deshmukh and Oren 2023
    • Allomuricauda flava (Yoon and Oh 2012) Deshmukh and Oren 2023
    • Allomuricauda flavescens (Yoon et al. 2005) Deshmukh and Oren 2023
    • Allomuricauda hadalis (Zhang et al. 2020) Deshmukh and Oren 2023
    • Allomuricauda hymeniacidonis (Park 2019) Deshmukh and Oren 2023
    • Allomuricauda indica (Zhang et al. 2018) Deshmukh and Oren 2023
    • Allomuricauda iocasae (Liu et al. 2018) Deshmukh and Oren 2023
    • Allomuricauda koreensis (García-López et al. 2020) Deshmukh and Oren 2023
    • Allomuricauda lutaonensis (Arun et al. 2009) Deshmukh and Oren 2023
    • Allomuricauda lutea (Wang et al. 2017) Deshmukh and Oren 2023
    • Allomuricauda lutimaris (Yoon et al. 2008) Deshmukh and Oren 2023
    • Allomuricauda marina (Su et al. 2017) Deshmukh and Oren 2023
    • Allomuricauda maritima (Guo et al. 2020) Deshmukh and Oren 2023
    • Allomuricauda nanhaiensis (Dang et al. 2019) Deshmukh and Oren 2023
    • Allomuricauda oceanensis (Guo et al. 2020) Deshmukh and Oren 2023
    • Allomuricauda oceani (Dong et al. 2020) Deshmukh and Oren 2023
    • Allomuricauda ochracea (Kim et al. 2020) Deshmukh and Oren 2023
    • Allomuricauda olearia (Hwang et al. 2009) Deshmukh and Oren 2023
    • Allomuricauda onchidii (Liang et al. 2021) Deshmukh and Oren 2023
    • Allomuricauda pacifica (Zhang et al. 2015) Deshmukh and Oren 2023
    • Allomuricauda parva (Liang et al. 2021) Deshmukh and Oren 2023
    • Allomuricauda profundi (Zhao et al. 2022) Deshmukh and Oren 2023
    • Allomuricauda ruestringensis (Bruns et al. 2001) Deshmukh and Oren 2023
    • Allomuricauda sediminis (Zhu et al. 2021) Deshmukh and Oren 2023
    • Allomuricauda spongiicola (Shin and Park 2023) Deshmukh and Oren 2023
    • Allomuricauda taeanensis (Kim et al. 2013) Deshmukh and Oren 2023
    • Allomuricauda zhangzhouensis (Yang et al. 2013) Deshmukh and Oren 2023
  • Amniculibacterium Chen et al. 2020
    • Amniculibacterium aquaticum Chen et al. 2020
  • Antarcticibacterium Li et al. 2018
    • Antarcticibacterium arcticum Lee et al. 2020
    • Antarcticibacterium flavum Li et al. 2018
  • Antarcticimonas Yang et al. 2014
    • Antarcticimonas flava Yang et al. 2014
  • Aquaticitalea Xamxidin et al. 2016
  • Aquibacter Hameed et al. 2014
  • 海水桿菌屬 Aquimarina Nedashkovskaya et al. 2005
  • Arcticiflavibacter Liu et al. 2016
  • 棲砂桿菌屬 Arenibacter Ivanova et al. 2001
  • Arenitalea Zhang et al. 2013
  • Ascidiimonas Yoon et al. 2016
  • Aurantiacicella Teramoto et al. 2016
  • Aurantibacter García-López et al. 2020
  • Aurantivirga Song et al. 2015
  • Aureibaculum Zhao et al. 2021
  • Aureicoccus Park et al. 2013
  • Aureisphaera Yoon et al. 2015
  • Aureitalea Park et al. 2012
  • Aureivirga Haber et al. 2013
  • 比茲奧氏菌屬 Bizionia Nedashkovskaya et al. 2005
  • 二氧化碳嗜纖維菌屬 Capnocytophaga Leadbetter et al. 1982
  • Cellulophaga Johansen et al. 1999
  • 長城站菌屬 Changchengzhania Wang et al. 2017
    • Changchengzhania lutea Wang et al. 2017[12]
  • 克里斯蒂安菌屬 Christiangramia Deshmukh and Oren 2023
  • Citreitalea Yoon et al. 2014，檸檬色桿菌屬
    • Citreitalea marina Yoon et al. 2014
  • 考諾尼亞菌屬 Coenonia Vandamme et al. 1999
  • Confluentibacter Park et al. 2016
    • Confluentibacter citreus Han et al. 2017
    • Confluentibacter flavum Li et al. 2018
    • Confluentibacter lentus Park et al. 2016
    • Confluentibacter sediminis Wei et al. 2019
  • Constantimarinum Yang et al. 2023
    • Constantimarinum furrinae Yang et al. 2023[13]
  • Corallibacter Kim et al. 2012
    • Corallibacter vietnamensis Kim et al. 2012
  • Costertonia Kwon et al. 2006
  • Croceibacter Cho and Giovannoni 2003
  • 藏紅花色纖細桿菌屬 Croceitalea Lee et al. 2008
  • 橘黃色桿菌屬 Croceivirga Hu et al. 2017
  • Daejeonia Siddiqi et al. 2017
  • 獨島菌屬 Dokdonia Yoon et al. 2005
  • 東海菌屬 Donghaeana Yoon et al. 2006，為Nonlabens Lau et al. 2005的異名
  • Eudoraea Alain et al. 2008
  • Euzebyella Lucena et al. 2010
    • Euzebyella algicola Kwon et al. 2018
    • Euzebyella marina Zhang et al. 2017
    • Euzebyella saccharophila Lucena et al. 2010
  • Faecalibacter Chen et al. 2020
    • Faecalibacter bovis Li et al. 2021
    • Faecalibacter macacae Chen et al. 2020
    • Faecalibacter rhinopitheci Wang et al. 2021
  • 鞭毛單胞菌屬 Flagellimonas Bae et al. 2007
  • 黃胞菌屬 Flavicella Teramoto and Nishijima, 2015
  • Flavihalobacter Yin et al. 2021，為Psychroserpens Bowman et al. 1997的異名
  • Flavimarina Nedashkovskaya et al., 2015
  • Flaviramulus Einen and Øvreås, 2006
    • Flaviramulus aestuariivivens Park et al. 2017
    • Flaviramulus aquimarinus Lee et al. 2015
    • Flaviramulus basaltis Einen and Øvreås 2006
    • Flaviramulus ichthyoenteri Zhang et al. 2013
    • Flaviramulus multivorans (Park et al. 2014) Liu et al. 2023[14]
  • Flavirhabdus Shakeela et al. 2015
  • 黃顏色桿菌屬 Flavivirga Yi et al. 2012
  • 黃桿菌屬 Flavobacterium Bergey et al. 1923
  • 華美菌屬 Formosa Ivanova et al. 2004
  • Frondibacter Yoon et al. 2015
  • Fulvibacter Khan et al. 2008
  • Gaetbulibacter Jung et al. 2005
  • Gaetbulimicrobium Yoon et al. 2006，為Aquimarina Nedashkovskaya et al. 2005的異名
  • Galbibacter Khan et al. 2007
    • Galbibacter marinus Li et al. 2013
    • Galbibacter mesophilus Khan et al. 2007
    • Galbibacter orientalis Wei et al. 2023[15]
    • Galbibacter pacificus Wei et al. 2023[15]
  • Gangjinia Lee et al. 2011
  • Gelatiniphilus Tang et al. 2016
  • 冰冷桿菌屬 Gelidibacter Bowman et al. 1997
  • Geojedonia Park et al. 2013
  • Gillisia Van Trappen et al. 2004
    • Gillisia hiemivivida Bowman and Nichols 2005
    • Gillisia illustrilutea Bowman and Nichols 2005
    • Gillisia limnaea Van Trappen et al. 2004
    • Gillisia lutea Vidal-Verdú et al. 2023[16]
    • Gillisia marina Roh et al. 2013
    • Gillisia mitskevichiae Nedashkovskaya et al. 2005
    • Gillisia myxillae Lee et al. 2006
    • Gillisia sandarakina Bowman and Nichols 2005
  • Gilvibacter Khan et al. 2007
  • 革蘭菌屬 Gramella Nedashkovskaya et al. 2005
  • 鹽黃桿菌屬 Haloflavibacter Feng et al. 2020
  • Hanstruepera Hameed et al. 2015
  • Hoppeia Kwon et al. 2014
  • Hwangdonia Jung et al. 2013
  • 李玄順菌屬 Hyunsoonleella Yoon et al. 2010
  • Ichthyenterobacterium Shakeela et al. 2015
  • Imtechella Surendra et al. 2012
  • Jejudonia Park et al. 2013
  • Jejuia Lee et al. 2009
  • 蘇特氏菌屬 Joostella Quan et al. 2008
  • 科迪亞菌屬 Kordia Sohn et al. 2004
  • Kriegella Nedashkovskaya et al. 2008
  • Krokinobacter Khan et al. 2006，為Dokdonia Yoon et al. 2005的異名
  • 湖養菌屬 Lacinutrix Bowman and Nichols 2005
  • 萊文虎克菌屬 Leeuwenhoekiella Nedashkovskaya et al. 2005
  • Leptobacterium Mitra et al. 2009
  • Litoribaculum Jin and Jeon 2015
  • Lutaonella Arun et al. 2009
  • 淤泥桿菌屬 Lutibacter Choi and Cho 2006
  • Lutimonas Yang et al. 2007
    • Lutimonas halocynthiae Kim et al. 2014
    • Lutimonas saemankumensis (Yoon et al. 2008) Kim et al. 2014
    • Lutimonas vermicola Yang et al. 2007
    • Lutimonas zeaxanthinifaciens Jung et al. 2024
  • 紅樹林單胞菌屬 Mangrovimonas Li et al. 2013
  • 棲海桿菌屬 Maribacter Nedashkovskaya et al. 2004
  • Mariniflexile Nedashkovskaya et al. 2006
    • Mariniflexile aquimaris Jung et al., 2012
    • Mariniflexile fucanivorans Barbeyron et al., 2008
    • Mariniflexile gromovii Nedashkovskaya et al., 2006
    • Mariniflexile jejuense Jung & Yoon, 2013
    • Mariniflexile maritimum Ko et al. 2021[17]
    • Mariniflexile ostreae Park et al., 2015
    • Mariniflexile soesokkakense Park et al., 2014
  • Marinirhabdus Wu et al. 2016
  • Marinivirga Park et al. 2013
  • Maripseudobacter Chen et al. 2017，異名
  • Maritimimonas Park et al. 2009
  • Marixanthomonas Romanenko et al. 2007
  • Marixanthotalea Fu et al. 2023
    • Marixanthotalea marina Fu et al. 2023[18]
  • Meridianimaribacter Wang et al. 2010
  • Mesoflavibacter Asker et al. 2008
  • 中度喜鹽桿菌屬 Mesohalobacter Feng et al. 2020
  • 海研站菌屬 Mesonia Nedashkovskaya et al. 2003
  • 鼠尾菌屬 Muricauda Bruns et al. 2001
  • Muriicola Kahng et al. 2010
    • Muriicola jejuensis Kahng et al., 2010
    • Muriicola marianensis Hu et al., 2015
    • Muriicola soli Kang et al. 2021[19]
  • 類香味菌屬 Myroides Vancanneyt et al. 1996
  • Namhaeicola Jung et al. 2012
  • Neptunitalea Yoon and Kasai 2015
    • Neptunitalea chrysea Yoon and Kasai 2015[20]
  • Nonlabens Lau et al. 2005
  • Oceanihabitans Zhang et al. 2016
  • Olleya Mancuso Nichols et al. 2005
  • Paenimyroides Zhang et al. 2023
    • Paenimyroides aestuarii Zhang et al. 2023[21]
    • Paenimyroides anatoliense (Kacagan et al. 2013) Zhang et al. 2023，也拼作：Paenimyroides anatoliensis
    • Paenimyroides aquimaris (García-López et al. 2020) Zhang et al. 2023
    • Paenimyroides baculatum (Chhetri et al. 2021) Zhang et al. 2023
    • Paenimyroides ceti (Vela et al. 2007) Zhang et al. 2023
    • Paenimyroides cloacae (Liu et al. 2017) Zhang et al. 2023
    • Paenimyroides naphthae (Chaudhary and Kim 2018) Zhang et al. 2023
    • Paenimyroides tangerinum (Li et al. 2020) Zhang et al. 2023
    • Paenimyroides ummariense (Lata et al. 2012) Zhang et al. 2023
    • Paenimyroides viscosum (Li et al. 2020) Zhang et al. 2023
  • 副研站菌屬 Paramesonia Wang et al. 2020
  • Pareuzebyella Huang et al. 2021
  • Patiriisocius Kawano et al. 2020
    • Patiriisocius marinus
    • Patiriisocius marinistellae Kawano et al. 2020[22]
  • Paucihalobacter Wu et al. 2020
  • Pelagihabitans Wang et al. 2020
  • Persicivirga O'Sullivan et al. 2006，為Nonlabens Lau et al. 2005的異名
  • Pibocella Nedashkovskaya et al. 2005
  • Planktosalinus Zhong et al. 2016
  • 極地桿菌屬 Polaribacter Gosink et al. 1998
  • Pontimicrobium Janthra et al. 2020
  • Pontirhabdus Yi et al. 2011，為Algibacter Nedashkovskaya et al. 2004的異名
  • 喜濱珊瑚菌屬 Poritiphilus Wang et al. 2020
  • Postechiella Lee et al. 2012
  • Pricia Yu et al. 2012
  • Pseudalgibacter Li et al. 2022
    • Pseudalgibacter alginicilyticus (Sun et al. 2016) Li et al. 2022[23]
  • Pseudobizionia Park et al. 2018
  • Pseudofulvibacter Yoon et al. 2013
  • 偽黏著桿菌屬 Pseudotenacibaculum Huang et al. 2016
  • Pseudozobellia Nedashkovskaya et al. 2009
  • 冷彎曲菌屬 Psychroflexus Bowman et al. 1999
  • 冷蛇菌屬 Psychroserpens Bowman et al. 1997
  • Pustulibacterium Wang et al. 2013
  • Robertkochia Hameed et al. 2014
  • Robiginitalea Cho and Giovannoni 2004
    • Robiginitalea aestuariiviva Cao et al. 2023[24]
    • Robiginitalea aurantiaca Zhou et al. 2023
    • Robiginitalea biformata Cho and Giovannoni 2004
    • Robiginitalea marina Xuan et al. 2023
    • Robiginitalea myxolifaciens Manh et al. 2008
    • Robiginitalea sediminis Zhang et al. 2020
  • Sabulilitoribacter Park et al. 2014
  • 需鹽桿菌屬 Salegentibacter McCammon and Bowman 2000
  • 鹽坑微菌屬 Salinimicrobium Lim et al. 2008
  • Sandarakinotalea Khan et al. 2006，為Nonlabens Lau et al. 2005的異名
  • Saonia Fagervold et al. 2017
  • Sediminibacter Khan et al. 2007
  • 棲沉積物桿菌屬 Sediminicola Khan et al. 2006
  • 西南海棲菌屬 Seonamhaeicola Park et al. 2014
  • Siansivirga Hameed et al. 2013
  • 中華微桿菌屬 Sinomicrobium Xu et al. 2013
  • Snuella Yi and Chun 2011
  • Spongiibacterium Yoon and Oh 2012，為'Flagellimonas Bae et al. 2007的異名
  • Spongiiferula Yoon et al. 2016
  • Spongiimicrobium Yoon et al. 2016
  • Spongiivirga Yoon et al. 2015
  • Stanierella Nedashkovskaya et al. 2005，為Aquimarina Nedashkovskaya et al. 2005的異名
  • Stenothermobacter Lau et al. 2006，為Nonlabens Lau et al. 2005的異名
  • Subsaxibacter Bowman and Nichols, 2005
  • Subsaximicrobium Bowman and Nichols, 2005
  • Sungkyunkwania Yoon et al. 2013
    • Sungkyunkwania multivorans Yoon et al. 2013[25]
  • Taeania Jung et al. 2016
  • 濟州島古名菌屬 Tamlana Lee 2007
  • 黏著桿菌屬 Tenacibaculum Suzuki et al. 2001
  • Thermobacterium Chen et al. 2023
    • Thermobacterium salinum Chen et al. 2023[26]
  • Ulvibacter Nedashkovskaya et al. 2004
  • Ulvibacterium Zhang et al. 2021
  • Urechidicola Shin and Yi 2020
  • Vitellibacter Nedashkovskaya et al. 2003，為Aequorivita Bowman and Nichols 2002的異名
  • Wangia Qin et al. 2007，為王祖農菌屬 （Zunongwangia Qin et al. 2007）的異名
  • 莊文穎氏菌屬 Wenyingzhuangia Liu et al. 2014
  • 維諾格拉斯基氏菌屬 Winogradskyella Nedashkovskaya et al. 2005
  • 臥蠶菌屬 Wocania He et al. 2020
  • Xanthomarina Vaidya et al. 2015
    • Xanthomarina gelatinilytica Vaidya et al. 2015
    • Xanthomarina spongicola (Yoon and Oh 2011) García-López et al. 2020
  • Yeosuana Kwon et al. 2006
    • Yeosuana aromativorans Kwon et al., 2006
    • Yeosuana marina Zhang et al. 2020[27]
  • Zeaxanthinibacter Asker et al. 2007
    • Zeaxanthinibacter aestuarii Lee et al. 2016
    • Zeaxanthinibacter enoshimensis Asker et al. 2007
  • 周氏菌屬 Zhouia Liu et al. 2006，周培瑾氏菌，以中科院微生物研究所研究員周培瑾的名字命名
    • Zhouia amylolytica Liu et al. 2006
    • Zhouia spongiae Zhuang et al. 2018
  • Zobellia Barbeyron et al. 2001
    • Zobellia alginiliquefaciens Barbeyron et al. 2023[28]
    • Zobellia amurskyensis Nedashkovskaya et al. 2004
    • Zobellia barbeyronii Nedashkovskaya et al. 2022
    • Zobellia galactanivorans corrig. Barbeyron et al. 2001
    • Zobellia galactanovorans Barbeyron et al. 2001
    • Zobellia laminariae Nedashkovskaya et al. 2004
    • Zobellia nedashkovskayae Barbeyron et al. 2021
    • Zobellia roscoffensis Barbeyron et al. 2021
    • Zobellia russellii Nedashkovskaya et al. 2004
    • Zobellia uliginosa (ZoBell and Upham 1944) Barbeyron et al. 2001
  • 王祖農菌屬 Zunongwangia Qin et al. 2007

參考文獻

編輯
  1. ^ 引用錯誤：沒有為名為Reichenbach的參考文獻提供內容
  2. ^ Boone DR, Castenholz RW (編). Bergey's Manual of Systematic Bacteriology. 1 (The Archaea and the deeply branching and phototrophic Bacteria) 2nd. New York, NY: Springer-Verlag. 2001: 465–466. 
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  4. ^ Flavobacteriaceae. GBIF. [2022-08-23]. （原始內容存檔於2021-06-16）. 
  5. ^ Xu X, Zhang S, Sun X, Xu X, Zhang J. Description of Abyssalbus ytuae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the sediment of the Mariana Trench. Int J Syst Evol Microbiol 2022; 72:5459.
  6. ^ Huang Z, Guo Y, Xiao Q, Liu X, Lai Q. Aegicerativicinus sediminis gen. nov., sp. nov., a novel carotenoid-producing marine bacterium in the family Flavobacteriaceae. Antonie Van Leeuwenhoek 2021; 114:1551-1563.
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  9. ^ 9.0 9.1 Wang YW, Zhang J, Wang SX, Du ZJ, Mu DS. Aequorivita vitellina sp. nov. and Aequorivita xiaoshiensis sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 2023; 73:5801.
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  • LPSN - List of Prokaryotic names with Standing in Nomenclature
取自「https://zh.wikipedia.org/w/index.php?title=黄杆菌科&oldid=83429368」